STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c19h8orf33Chromosome 19 C8orf33 homolog. (297 aa)    
Predicted Functional Partners:
grwd1
Glutamate rich WD repeat containing 1.
   
   0.629
LACTB2
Lactamase beta 2.
      
 0.529
ENSBSLP00000035846
annotation not available
   
   0.520
hgh1
HGH1 homolog.
      
 0.516
prcc
Proline rich mitotic checkpoint control factor.
      
 0.433
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
   
    0.432
timm29
Translocase of inner mitochondrial membrane 29.
   
  
 0.421
trmt112
tRNA methyltransferase subunit 11-2.
   
  
 0.421
dscc1
DNA replication and sister chromatid cohesion 1.
      
 0.420
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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