STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf38bpre-mRNA processing factor 38B. (458 aa)    
Predicted Functional Partners:
uchl5
Ubiquitin C-terminal hydrolase L5.
 
      0.882
ENSBSLP00000037601
Ubiquitin B.
    
   0.881
luc7l3
LUC7 like 3 pre-mRNA splicing factor.
   
 
 0.820
pnn
Pinin, desmosome associated protein.
   
    0.818
LOC114849870
RNA-binding protein 25-like.
   
  
 0.769
LOC114848380
RNA-binding protein 25-like.
   
  
 0.769
prpf4b
pre-mRNA processing factor 4B.
   
    0.698
rsrc2
Arginine and serine rich coiled-coil 2.
   
    0.596
ENSBSLP00000004372
Splicing regulatory glutamine/lysine-rich protein 1.
   
   0.582
srsf11
Serine and arginine rich splicing factor 11.
   
   0.582
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.