STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114863991Transmembrane and coiled-coil domain-containing protein 6-like. (535 aa)    
Predicted Functional Partners:
kpnb1
Karyopherin subunit beta 1.
   
 0.902
cse1l
Chromosome segregation 1 like.
   
 0.884
nup153
Nucleoporin 153.
   
 0.756
LOC114846828
ranBP2-like and GRIP domain-containing protein 3.
   
 0.736
NCBP1
Nuclear cap binding protein subunit 1.
   
 
 0.734
ncbp2
Nuclear cap binding protein subunit 2.
    
 
 0.704
nup50
Nucleoporin 50.
   
 
 0.690
rrp8
Ribosomal RNA processing 8.
    
   0.688
exosc10
Exosome component 10.
    
   0.688
ENSBSLP00000040395
annotation not available
   
 0.676
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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