STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr54WD repeat domain 54. (339 aa)    
Predicted Functional Partners:
ankfy1
Ankyrin repeat and FYVE domain containing 1.
     
 0.930
vps35
VPS35 retromer complex component.
    
  0.638
vps29
VPS29 retromer complex component.
    
  0.638
LOC114866248
Protein OSCP1-like.
    
   0.637
OSCP1
Organic solute carrier partner 1.
    
   0.637
dennd5a
DENN domain containing 5A.
    
 0.469
LOC114861407
DENN domain-containing protein 5B-like.
    
 0.469
LOC114857962
DENN domain-containing protein 5B-like.
    
 0.469
ccdc142
Coiled-coil domain containing 142.
      
 0.432
tbc1d5
TBC1 domain family member 5.
     
 0.403
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.