STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114845471Ankyrin repeat and SOCS box protein 3-like. (558 aa)    
Predicted Functional Partners:
ENSBSLP00000034375
Elongin C paralog a.
    
 0.759
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.742
CUL5
Cullin-5-like.
    
 0.668
LOC114867766
Cullin-5.
    
 0.668
asb6
Ankyrin repeat and SOCS box containing 6.
  
 
 0.650
rps3
Ribosomal protein S3.
    
 0.634
ift81
Intraflagellar transport 81.
    
 0.620
LOC114844452
NF-kappa-B inhibitor zeta-like.
  
 0.619
REL
REL proto-oncogene, NF-kB subunit.
   
 0.619
LOC114851349
Transcription factor p65-like.
   
 0.619
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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