STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114866465Retinitis pigmentosa 1-like 1 protein. (2329 aa)    
Predicted Functional Partners:
pot1
Protection of telomeres 1.
    
 0.789
stam2
Signal transducing adaptor molecule 2.
    
 0.639
stam
Signal transducing adaptor molecule.
    
 0.639
tert
Telomerase reverse transcriptase.
    
 0.634
arl2bp
ADP ribosylation factor like GTPase 2 binding protein.
      
 0.527
c16h8orf37
Chromosome 16 C8orf37 homolog.
      
 0.527
ttc8
Tetratricopeptide repeat domain 8.
      
 0.506
guca1a
Guanylate cyclase activator 1A.
   
 
 0.495
sox7
SRY-box transcription factor 7.
    
 
 0.482
LOC114864422
RDS/peripherin-like protein xRDS35.
   
  
 0.466
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.