STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc6Coiled-coil domain containing 6. (459 aa)    
Predicted Functional Partners:
ret
Ret proto-oncogene.
     
 0.920
ppp4c
Protein phosphatase 4 catalytic subunit.
    
 
 0.764
ppp4r1
Protein phosphatase 4 regulatory subunit 1.
    
 
 0.723
LOC114867941
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform.
    
 
 0.716
relch
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
    
 
 0.637
stil
STIL centriolar assembly protein.
     
 0.632
LOC114864497
Fibroblast growth factor receptor-like 1.
     
 0.632
fgfr2
Fibroblast growth factor receptor 2.
     
 0.632
LOC114848555
Fibroblast growth factor receptor 3.
     
 0.632
FGFRL1
Fibroblast growth factor receptor-like 1.
     
 0.632
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.