STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhlrc1NHL repeat containing E3 ubiquitin protein ligase 1. (399 aa)    
Predicted Functional Partners:
epm2a
EPM2A glucan phosphatase, laforin.
    
 0.946
LOC114844675
Glycogen debranching enzyme-like.
    
 
 0.585
adam23
ADAM metallopeptidase domain 23.
      
 0.557
rps27a
Ribosomal protein S27a.
    
  0.525
LOC114860817
Glycogen [starch] synthase, muscle-like.
    
 0.521
LOC114861320
Glycogen [starch] synthase, liver-like.
    
 0.521
dhx57
DExH-box helicase 57.
    
 0.499
neu1
Neuraminidase 1.
      
 0.497
ube2t
Ubiquitin conjugating enzyme E2 T.
   
 0.493
zfand4
Zinc finger AN1-type containing 4.
    
  0.483
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.