STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raver2Ribonucleoprotein, PTB binding 2. (934 aa)    
Predicted Functional Partners:
eprs1
glutamyl-prolyl-tRNA synthetase 1.
   
 0.969
LOC114841762
Adenosine kinase-like.
    
 
 0.924
vcl
Vinculin.
    
 
 0.924
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
   0.854
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
    0.822
dhx9
DExH-box helicase 9.
   
 0.703
ndor1
NADPH dependent diflavin oxidoreductase 1.
   
    0.694
LOC114866707
Heterogeneous nuclear ribonucleoprotein K-like.
   
 0.654
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.654
rps6
Ribosomal protein S6.
   
 
 0.643
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.