STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrit3Leucine rich repeat, Ig-like and transmembrane domains 3. (615 aa)    
Predicted Functional Partners:
PTK7
Protein tyrosine kinase 7 (inactive).
    
 0.899
ripk4
Receptor interacting serine/threonine kinase 4.
    
 0.857
LOC114843883
netrin-G1-like.
    
 0.843
ntng1
Netrin G1.
    
 0.843
COL22A1
Collagen type XXII alpha 1 chain.
    
  0.830
HGFAC
HGF activator.
    
 0.801
habp2
Hyaluronan binding protein 2.
    
 0.801
mst1r
Macrophage stimulating 1 receptor.
   
 0.797
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.797
LOC114856141
Macrophage-stimulating protein receptor-like.
   
 0.797
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.