STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d16TBC1 domain family member 16. (767 aa)    
Predicted Functional Partners:
LOC114868067
Ras-related protein Rab-4B.
    
 0.742
rab4a
RAB4A, member RAS oncogene family.
    
 0.742
dgke
Diacylglycerol kinase epsilon.
      
 0.557
tbc1d23
TBC1 domain family member 23.
      
 0.530
rab2a
RAB2A, member RAS oncogene family.
    
 0.490
dnajc27
DnaJ heat shock protein family (Hsp40) member C27.
    
  0.473
ENSBSLP00000034934
Caspase recruitment domain family, member 14.
      
 0.444
pla2g6
Phospholipase A2 group VI.
      
 0.439
pcgf1
Polycomb group ring finger 1.
      
 0.439
tbc1d4
TBC1 domain family member 4.
      
 0.439
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.