STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znhit3Zinc finger HIT-type containing 3. (140 aa)    
Predicted Functional Partners:
ZNHIT6
Zinc finger HIT-type containing 6.
    
 0.972
nop58
NOP58 ribonucleoprotein.
    
 0.907
nop56
NOP56 ribonucleoprotein.
     
 0.865
pih1d1
PIH1 domain containing 1.
     
 0.852
pih1d2
PIH1 domain containing 2.
     
 0.733
nufip1
Nuclear FMR1 interacting protein 1.
    
 0.700
snu13
Small nuclear ribonucleoprotein 13.
   
 0.611
ruvbl1
RuvB like AAA ATPase 1.
    
 
 0.536
tada2a
Transcriptional adaptor 2A.
    
 
 0.526
mrm1
Mitochondrial rRNA methyltransferase 1.
      
 0.518
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.