STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114869375Homeobox protein otx5-like. (308 aa)    
Predicted Functional Partners:
LOC114841864
Double homeobox protein 4-like.
    
0.631
LOC114853472
Transcription factor MafA-like.
    
 
 0.528
thrb
Thyroid hormone receptor beta.
   
 
 0.524
nr1d1
Nuclear receptor subfamily 1 group D member 1.
    
 
 0.510
LOC114855534
Retinoic acid receptor gamma-A-like.
    
 
 0.476
rarg
Retinoic acid receptor gamma.
    
 
 0.476
neurod1
Neuronal differentiation 1.
   
  
 0.461
nr2e1
Nuclear receptor subfamily 2 group E member 1.
   
 
 0.440
NR2E1
Nuclear receptor subfamily 2 group E member 1.
   
 
 0.440
tnpo3
Transportin 3.
      
 0.424
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.