STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdh5Cadherin 5. (784 aa)    
Predicted Functional Partners:
ctnnb1
Catenin beta 1.
    
 0.994
LOC114856819
Junction plakoglobin-like.
    
 0.958
jup
Junction plakoglobin.
    
 0.958
cdh17
Cadherin 17.
     
0.930
LOC114865743
Catenin beta-1-like.
    
 0.928
cdh13
Cadherin 13.
     
0.920
LOC114860937
Platelet endothelial cell adhesion molecule-like.
   
 0.920
LOC114855001
Platelet endothelial cell adhesion molecule-like.
   
 0.920
LOC114859445
Platelet endothelial cell adhesion molecule-like.
   
 0.920
pard3
Par-3 family cell polarity regulator.
    
 
 0.911
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.