STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smcr8SMCR8-C9orf72 complex subunit. (907 aa)    
Predicted Functional Partners:
c9orf72
C9orf72-SMCR8 complex subunit.
    
 0.990
wdr41
WD repeat domain 41.
    
 0.986
atg13
Autophagy related 13.
    
 0.890
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.887
ENSBSLP00000004992
TANK-binding kinase 1.
   
 0.884
rab39b
RAB39B, member RAS oncogene family.
    
 0.870
LOC114862946
Serine/threonine-protein kinase ULK1-like.
    
 0.868
ulk1
Unc-51 like autophagy activating kinase 1.
    
 0.868
atg101
Autophagy related 101.
     
 0.865
LOC114865379
Ras-related protein Rab-39B-like.
    
 0.860
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.