STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114857378CUGBP Elav-like family member 2. (522 aa)    
Predicted Functional Partners:
LOC114845192
Heterogeneous nuclear ribonucleoprotein C-like.
   
 
 0.871
LOC114845021
Heterogeneous nuclear ribonucleoprotein C-like.
   
 
 0.637
LOC114851941
Heterogeneous nuclear ribonucleoprotein C-like.
    
 
 0.591
ralyl
RALY RNA binding protein like.
    
 
 0.591
raly
RALY heterogeneous nuclear ribonucleoprotein.
    
 
 0.591
ENSBSLP00000057010
RALY RNA binding protein like.
    
 
 0.591
LOC114864045
Protein bicaudal C homolog 1-B-like.
   
 
 0.494
WDR33
WD repeat domain 33.
   
 
 0.467
wdr77
WD repeat domain 77.
   
 
 0.452
cpeb1
Cytoplasmic polyadenylation element binding protein 1.
    
 
 0.435
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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