STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc7bTetratricopeptide repeat domain 7B. (908 aa)    
Predicted Functional Partners:
pi4ka
Phosphatidylinositol 4-kinase alpha.
    
 
 0.940
fam126a
Family with sequence similarity 126 member A.
    
 
 0.862
efr3b
EFR3 homolog B.
   
 
 0.837
efr3a
EFR3 homolog A.
   
 
 0.780
fam126b
Family with sequence similarity 126 member B.
    
 
 0.749
LOC114861795
Transmembrane protein 150A-like.
      
 0.451
pcmt1
protein-L-isoaspartate (D-aspartate) O-methyltransferase.
      
 0.439
LOC114843239
Phosphatidylinositide phosphatase SAC1-B.
    
 
 0.427
sacm1l
SAC1 like phosphatidylinositide phosphatase.
    
 
 0.427
pcsk9
Proprotein convertase subtilisin/kexin type 9.
    
 
 0.427
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.