STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdfy3WD repeat and FYVE domain containing 3. (3568 aa)    
Predicted Functional Partners:
atg5
Autophagy related 5.
    
 0.973
atg12
Autophagy related 12.
    
 0.968
atg16l1
Autophagy related 16 like 1.
    
0.876
LOC114867572
Autophagy-related protein 16-2-like.
    
 0.876
sqstm1
Sequestosome 1.
   
 
 0.836
smpd2
Sphingomyelin phosphodiesterase 2.
     
 0.827
plekhg7
Pleckstrin homology and RhoGEF domain containing G7.
    
 0.756
rpia
Ribose 5-phosphate isomerase A.
     
 0.742
gabarapl2
GABA type A receptor associated protein like 2.
   
 
 0.741
GABARAPL2
GABA type A receptor associated protein like 2.
   
 
 0.741
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.