STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
unklUnk like zinc finger. (812 aa)    
Predicted Functional Partners:
atg7
Autophagy related 7.
    
  0.489
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.488
ino80c
INO80 complex subunit C.
      
 0.449
dele1
DAP3 binding cell death enhancer 1.
      
 0.432
LOC114845540
Tumor necrosis factor receptor superfamily member 10B-like.
      
 0.428
ube2b
Ubiquitin conjugating enzyme E2 B.
    
  0.409
LOC114847102
Ubiquitin-conjugating enzyme E2 A-like.
    
  0.409
ube2a
Ubiquitin conjugating enzyme E2 A.
    
  0.409
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.