STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brf2BRF2 RNA polymerase III transcription initiation factor subunit. (450 aa)    
Predicted Functional Partners:
gtf3c3
General transcription factor IIIC subunit 3.
    
 0.994
bdp1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.
    
 0.992
polr3f
RNA polymerase III subunit F.
    
 0.969
polr3a
RNA polymerase III subunit A.
   
 0.966
gtf3c5
General transcription factor IIIC subunit 5.
    
 0.964
polr3b
RNA polymerase III subunit B.
   
 0.960
polr2k
RNA polymerase II subunit K.
    
 0.955
gtf2b
General transcription factor IIB.
     
 0.953
gtf3c1
General transcription factor IIIC subunit 1.
   
 
 0.947
gtf3c4
General transcription factor IIIC subunit 4.
     
 0.939
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.