STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114858301RNA-binding protein 39-like. (476 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b subunit 1.
   
 0.959
LOC114849615
Protein SON-like.
   
  0.934
cdc5l
Cell division cycle 5 like.
   
 
 0.915
dcaf15
DDB1 and CUL4 associated factor 15.
    
 
 0.908
LOC114849870
RNA-binding protein 25-like.
   
 0.908
LOC114848380
RNA-binding protein 25-like.
   
 0.908
LOC114860732
Splicing factor U2AF 65 kDa subunit-like.
   
 
0.886
u2af2
U2 small nuclear RNA auxiliary factor 2.
   
 
0.886
prpf40a
pre-mRNA processing factor 40 homolog A.
   
  0.867
luc7l3
LUC7 like 3 pre-mRNA splicing factor.
   
 0.853
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.