STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ift140Intraflagellar transport 140. (1430 aa)    
Predicted Functional Partners:
IFT122
Intraflagellar transport 122.
  
 0.999
wdr35
WD repeat domain 35.
    
 0.999
ttc21b
Tetratricopeptide repeat domain 21B.
  
 0.997
IFT43
Intraflagellar transport 43.
    
 0.997
ift80
Intraflagellar transport 80.
   
 0.986
ift20
Intraflagellar transport 20.
    
 0.975
ift81
Intraflagellar transport 81.
    
 0.973
ift172
Intraflagellar transport 172.
   
 0.973
ttc26
Tetratricopeptide repeat domain 26.
   
 
 0.967
ift57
Intraflagellar transport 57.
     
 0.966
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.