STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114844315Cysteine-rich secretory protein LCCL domain-containing 1-like. (490 aa)    
Predicted Functional Partners:
gart
annotation not available
    
  0.851
LOC114864912
Malate synthase-like.
    
  0.839
ppat
Phosphoribosyl pyrophosphate amidotransferase.
  
 
  0.656
pc
Pyruvate carboxylase.
    
  0.619
l2hgdh
L-2-hydroxyglutarate dehydrogenase.
    
  0.592
nadk
NAD kinase.
    
  0.584
LOC114845067
NAD kinase-like.
    
  0.584
ndufv2
NADH:ubiquinone oxidoreductase core subunit V2.
    
  0.571
fh
Fumarate hydratase.
    
  0.570
ephx2
Epoxide hydrolase 2.
  
 
 0.496
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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