STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trip12Thyroid hormone receptor interactor 12. (2054 aa)    
Predicted Functional Partners:
UBR1
Ubiquitin protein ligase E3 component n-recognin 1.
   
 0.999
LOC114856283
NEDD8-activating enzyme E1 catalytic subunit-like.
    
 0.993
UBA3
NEDD8-activating enzyme E1 catalytic subunit.
    
 0.993
LOC114854994
Ubiquitin-like modifier-activating enzyme 1.
   
 0.992
uba1
Ubiquitin like modifier activating enzyme 1.
   
 0.992
uba6
Ubiquitin like modifier activating enzyme 6.
   
 0.992
ltn1
Listerin E3 ubiquitin protein ligase 1.
   
 
 0.991
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
  0.989
atg7
Autophagy related 7.
    
 0.987
uba5
Ubiquitin like modifier activating enzyme 5.
    
 0.987
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.