STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jsrp1Junctional sarcoplasmic reticulum protein 1. (307 aa)    
Predicted Functional Partners:
tep1
Telomerase associated protein 1.
    
 0.586
LOC114855982
Complement C1q subcomponent subunit C-like.
   
  0.548
rptor
Regulatory associated protein of MTOR complex 1.
    
 0.480
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.474
mlst8
MTOR associated protein, LST8 homolog.
    
  0.461
det1
DET1 partner of COP1 E3 ubiquitin ligase.
    
  0.460
LOC114869055
Transcription initiation factor TFIID subunit 9-like.
    
  0.459
trrap
Transformation/transcription domain associated protein.
    
  0.459
taf12
TATA-box binding protein associated factor 12.
    
  0.459
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
  0.457
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.