STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114846776Splicing factor U2AF 35 kDa subunit. (249 aa)    
Predicted Functional Partners:
LOC114860732
Splicing factor U2AF 65 kDa subunit-like.
   
 0.983
u2af2
U2 small nuclear RNA auxiliary factor 2.
   
 0.983
sf3b1
Splicing factor 3b subunit 1.
   
 0.945
sf3a2
Splicing factor 3a subunit 2.
   
 0.940
sf1
Splicing factor 1.
 
 
 0.929
sf3a1
Splicing factor 3a subunit 1.
   
 0.919
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.913
ENSBSLP00000050458
Small nuclear ribonucleoprotein D3 polypeptide, like.
   
 0.911
snrpc
Small nuclear ribonucleoprotein polypeptide C.
   
 0.905
ENSBSLP00000048522
Small nuclear ribonucleoprotein polypeptide G.
   
 0.905
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.