STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zgpatZinc finger CCCH-type and G-patch domain containing. (527 aa)    
Predicted Functional Partners:
prpf3
pre-mRNA processing factor 3.
   
   0.792
e4f1
E4F transcription factor 1.
   
   0.733
prpf4
pre-mRNA processing factor 4.
    
   0.680
dnajc10
DnaJ heat shock protein family (Hsp40) member C10.
   
  
 0.544
MARCHF6
Membrane associated ring-CH-type finger 6.
   
  
 0.515
LOC114844259
E3 ubiquitin-protein ligase MARCH6-like.
   
  
 0.515
slc25a20
Solute carrier family 25 member 20.
 
    
 0.502
wdr53
WD repeat domain 53.
    
   0.478
daw1
Dynein assembly factor with WD repeats 1.
    
   0.478
LOC114858810
Mitochondrial carnitine/acylcarnitine carrier protein-like.
 
    
 0.468
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.