STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pacrgParkin coregulated. (228 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
    
 
 0.997
enkur
Enkurin, TRPC channel interacting protein.
   
 
 0.957
efhc1
EF-hand domain containing 1.
  
 
 0.954
efhc2
EF-hand domain containing 2.
  
 
 0.953
meig1
Meiosis/spermiogenesis associated 1.
    
 
 0.942
efhb
EF-hand domain family member B.
   
   0.928
cfap20
Cilia and flagella associated protein 20.
    
 
 0.902
ENSBSLP00000007180
annotation not available
    
 
 0.899
cfap52
Cilia and flagella associated protein 52.
   
 
 0.893
mns1
Meiosis specific nuclear structural 1.
  
 
 
 0.890
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.