STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf3PHD finger protein 3. (1677 aa)    
Predicted Functional Partners:
polr2a
RNA polymerase II subunit A.
    
 0.952
POLR2E
RNA polymerase II subunit E.
    
  0.932
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
   
 
  0.927
polr2c
RNA polymerase II subunit C.
    
  0.915
nipbl
NIPBL cohesin loading factor.
   
  
 0.876
LOC114867157
nipped-B-like protein.
   
  
 0.876
polr2i
RNA polymerase II subunit I.
    
 0.856
setd2
SET domain containing 2, histone lysine methyltransferase.
   
 
 0.842
polr2j
RNA polymerase II subunit J.
    
 0.835
polr2d
RNA polymerase II subunit D.
    
  0.828
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.