STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM50Tripartite motif containing 50. (494 aa)    
Predicted Functional Partners:
anxa6
Annexin A6.
     
 0.648
LOC114846523
Myoferlin-like.
     
 0.623
dysf
Dysferlin.
     
 0.623
LOC114842063
Myoferlin-like.
     
 0.623
ENSBSLP00000037601
Ubiquitin B.
    
  0.579
rps27a
Ribosomal protein S27a.
    
  0.575
LOC114852711
Annexin A2-like.
    
 0.497
LOC114857301
Annexin A2-like.
    
 0.497
anxa1
Annexin A1.
    
 0.497
LOC114846116
Ubiquitin-conjugating enzyme E2 L3.
    
  0.484
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.