STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdm1aLysine demethylase 1A. (843 aa)    
Predicted Functional Partners:
phf21a
PHD finger protein 21A.
    
 0.994
rcor2
REST corepressor 2.
   
 0.988
rcor3
REST corepressor 3.
   
 0.988
hmg20b
High mobility group 20B.
   
 0.980
tp53bp1
Tumor protein p53 binding protein 1.
   
 0.958
hmg20a
High mobility group 20A.
   
 0.948
msh6
mutS homolog 6.
  
 0.944
msh3
mutS homolog 3.
  
 0.941
znf217
Zinc finger protein 217.
    
 0.937
msh2
mutS homolog 2.
  
 0.937
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.