STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg5Autophagy related 5. (275 aa)    
Predicted Functional Partners:
atg12
Autophagy related 12.
   
 0.999
atg3
Autophagy related 3.
   
 0.995
LOC114859810
Tectonin beta-propeller repeat-containing protein 1-like.
    
 0.994
atg16l1
Autophagy related 16 like 1.
   
 0.990
LOC114867572
Autophagy-related protein 16-2-like.
   
 0.990
wdfy3
WD repeat and FYVE domain containing 3.
    
 0.973
atg7
Autophagy related 7.
    
 0.954
LOC114848314
Flocculation protein FLO11-like.
    
 0.949
wipi2
WD repeat domain, phosphoinositide interacting 2.
    
 0.947
WIPI1
WD repeat domain, phosphoinositide interacting 1.
    
 0.941
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.