STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114859253Tumor protein D54-like. (250 aa)    
Predicted Functional Partners:
LOC114865652
Tumor protein D52-like.
    
  
0.664
gabpb2
GA binding protein transcription factor subunit beta 2.
    
  0.652
tpd52l1
TPD52 like 1.
  
 
 
0.629
vamp7
Vesicle associated membrane protein 7.
     
 0.618
snx6
Sorting nexin 6.
   
 
  0.516
snx5
Sorting nexin 5.
   
 
  0.516
gabpa
GA binding protein transcription factor subunit alpha.
    
   0.481
mal2
Mal, T cell differentiation protein 2.
   
 
 0.471
LOC114863917
Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2B-like.
    
  0.402
inppl1
Inositol polyphosphate phosphatase like 1.
    
  0.402
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.