STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf142Zinc finger protein 142. (1549 aa)    
Predicted Functional Partners:
mrps16
Mitochondrial ribosomal protein S16.
   
 0.670
polr3c
RNA polymerase III subunit C.
    
 0.642
ENSBSLP00000048337
annotation not available
    
  0.578
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.564
ambra1
Autophagy and beclin 1 regulator 1.
   
  0.529
ENSBSLP00000021696
annotation not available
    
 0.517
stk36
Serine/threonine kinase 36.
    
 0.517
LOC114847215
Thioredoxin domain-containing protein 3 homolog.
    
 0.516
bard1
BRCA1 associated RING domain 1.
    
  0.516
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.505
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.