STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rxraRetinoid X receptor alpha. (499 aa)    
Predicted Functional Partners:
nr1h3
Nuclear receptor subfamily 1 group H member 3.
   
0.970
PPARG
Peroxisome proliferator activated receptor gamma.
    
0.947
LOC114861502
Peroxisome proliferator-activated receptor alpha-like.
    
0.920
med1
Mediator complex subunit 1.
    
 0.920
ppard
Peroxisome proliferator activated receptor delta.
    
0.918
LOC114858492
Bile acid receptor-like.
   
0.888
nr1h4
Nuclear receptor subfamily 1 group H member 4.
   
0.888
ncor2
Nuclear receptor corepressor 2.
    
 0.886
ncor1
Nuclear receptor corepressor 1.
    
 0.886
nr1i2
Nuclear receptor subfamily 1 group I member 2.
    
0.880
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.