STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcmtd1protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1. (360 aa)    
Predicted Functional Partners:
gart
annotation not available
     
 0.465
eprs1
glutamyl-prolyl-tRNA synthetase 1.
     
 0.464
LOC114868028
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like.
  
    0.456
sod2
Superoxide dismutase 2.
  
  
 0.447
ndufs3
NADH:ubiquinone oxidoreductase core subunit S3.
  
   0.437
pus7
Pseudouridine synthase 7.
     
 0.432
adsl
Adenylosuccinate lyase.
  
  
 0.410
wdyhv1
WDYHV motif containing 1.
      
 0.404
CUL5
Cullin-5-like.
    
   0.402
LOC114867766
Cullin-5.
    
   0.402
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.