STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdr39u1Short chain dehydrogenase/reductase family 39U member 1. (302 aa)    
Predicted Functional Partners:
fech
Ferrochelatase.
  
  
 0.538
ncln
Nicalin.
      
 0.532
hsdl2
Hydroxysteroid dehydrogenase like 2.
  
  
 0.496
SLC39A12
Solute carrier family 39 member 12.
  
    0.449
slc39a8
Solute carrier family 39 member 8.
  
    0.449
ENSBSLP00000026363
annotation not available
  
    0.449
LOC114866230
Zinc transporter ZIP4-like.
  
    0.449
ENSBSLP00000027323
annotation not available
  
    0.449
slc39a7
Solute carrier family 39 member 7.
  
    0.449
LOC114861884
Zinc transporter ZIP14-like.
  
    0.449
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.