STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntrk3Neurotrophic receptor tyrosine kinase 3. (840 aa)    
Predicted Functional Partners:
LOC114859825
Neurotrophin-3-like.
    
 0.903
bdnf
Brain derived neurotrophic factor.
   
 0.837
LOC114843863
Receptor-type tyrosine-protein phosphatase S-like.
   
 0.832
LOC114853104
Receptor-type tyrosine-protein phosphatase S-like.
   
 0.832
ntf3
Neurotrophin 3.
    
 0.825
SHC3
SHC adaptor protein 3.
   
 0.824
plcg1
Phospholipase C gamma 1.
    
 0.822
shc1
SHC adaptor protein 1.
   
 0.818
grb2
Growth factor receptor bound protein 2.
    
 0.797
shc2
SHC adaptor protein 2.
    
 0.787
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.