STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdap2Ganglioside induced differentiation associated protein 2. (500 aa)    
Predicted Functional Partners:
akt1s1
AKT1 substrate 1.
   
    0.695
aifm1
Apoptosis inducing factor mitochondria associated 1.
  
 0.558
hdac11
Histone deacetylase 11.
  
  0.553
wdr3
WD repeat domain 3.
      
 0.546
LOC114842109
Core histone macro-H2A.2-like.
  
 
 
0.498
LOC114868929
Core histone macro-H2A.1.
  
 
 
0.495
pyroxd1
Pyridine nucleotide-disulphide oxidoreductase domain 1.
  
 0.477
ENSBSLP00000000614
annotation not available
   
 
 0.458
dtx3
Deltex E3 ubiquitin ligase 3.
   
 
 0.458
LOC114846001
E3 ubiquitin-protein ligase DTX3L-like.
   
 
 0.458
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.