STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
agap3ArfGAP with GTPase domain, ankyrin repeat and PH domain 3. (1338 aa)    
Predicted Functional Partners:
arfgap1
ADP ribosylation factor GTPase activating protein 1.
     
0.744
asap3
ArfGAP with SH3 domain, ankyrin repeat and PH domain 3.
   
0.705
unc5b
Unc-5 netrin receptor B.
    
  0.671
tanc1
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1.
    
   0.645
LOC114854505
Cyclin-dependent kinase 4 inhibitor B-like.
    
  0.606
ENSBSLP00000014534
annotation not available
    
  0.606
SMAP1
Stromal membrane-associated protein 1-like.
     
0.581
LOC114865790
Stromal membrane-associated protein 2-like.
     
0.581
arap2
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2.
     
0.569
ARAP1
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1.
     
0.569
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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