STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptx3Pentraxin 3. (458 aa)    
Predicted Functional Partners:
tnfaip6
TNF alpha induced protein 6.
   
 
 0.817
LOC114857615
Phosphatidylcholine-sterol acyltransferase-like.
     
 0.789
ENSBSLP00000018372
annotation not available
    
 
 0.741
LOC114862298
Fibrinogen C domain-containing protein 1-like.
    
 
 0.556
LOC114866526
Fibrinogen C domain-containing protein 1-like.
    
 
 0.556
LOC114866826
Protein AMBP-like.
      
 0.530
LOC114841939
Fibroblast growth factor 8-like.
    
 
 0.503
FGF6
Fibroblast growth factor 6.
    
 
 0.496
FGF6-2
Fibroblast growth factor 6-like.
    
 
 0.496
dgke
Diacylglycerol kinase epsilon.
     
 0.457
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.