STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114845377Ubiquitin carboxyl-terminal hydrolase 22. (516 aa)    
Predicted Functional Partners:
sgf29
SAGA complex associated factor 29.
   
 0.989
trrap
Transformation/transcription domain associated protein.
    
 0.988
taf10
TATA-box binding protein associated factor 10.
    
 0.987
tada3
Transcriptional adaptor 3.
    
 0.987
taf12
TATA-box binding protein associated factor 12.
    
 0.987
LOC114869055
Transcription initiation factor TFIID subunit 9-like.
    
 0.986
taf6
TATA-box binding protein associated factor 6.
    
 0.986
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 0.985
tada2a
Transcriptional adaptor 2A.
    
 0.983
TADA1
Transcriptional adaptor 1.
    
  0.980
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.