STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc125Coiled-coil domain containing 125. (482 aa)    
Predicted Functional Partners:
ccdc96
Coiled-coil domain containing 96.
      
 0.534
ccdc92
Coiled-coil domain containing 92.
      
 0.526
ccdc113
Coiled-coil domain containing 113.
      
 0.517
polr2b
RNA polymerase II subunit B.
      
 0.503
LOC114855254
Transforming acidic coiled-coil-containing protein 1-like.
      
 0.501
bicdl1
BICD family like cargo adaptor 1.
      
 0.447
rasl11b
RAS like family 11 member B.
      
 0.435
LOC114854583
Coiled-coil domain-containing protein 149-like.
      
 0.431
LOC114870785
Coiled-coil domain-containing protein 149-like.
      
 0.431
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.