STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OXLD1Oxidoreductase like domain containing 1. (146 aa)    
Predicted Functional Partners:
grpel1
GrpE like 1, mitochondrial.
    
 
 0.656
trmt61b
tRNA methyltransferase 61B.
    
   0.475
cars2
cysteinyl-tRNA synthetase 2, mitochondrial.
    
   0.454
fmc1
Formation of mitochondrial complex V assembly factor 1 homolog.
   
   0.453
hibch
3-hydroxyisobutyryl-CoA hydrolase.
    
   0.416
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.