STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcaf5DDB1 and CUL4 associated factor 5. (786 aa)    
Predicted Functional Partners:
ddb1
Damage specific DNA binding protein 1.
    
 0.996
dcaf4
DDB1 and CUL4 associated factor 4.
     
 0.965
dcaf12
DDB1 and CUL4 associated factor 12.
     
 0.964
trpc4ap
Transient receptor potential cation channel subfamily C member 4 associated protein.
     
 0.964
ddb2
Damage specific DNA binding protein 2.
     
 0.963
dcaf6
DDB1 and CUL4 associated factor 6.
   
 
0.962
dcaf10
DDB1 and CUL4 associated factor 10.
     
 0.953
dcaf11
DDB1 and CUL4 associated factor 11.
    
0.952
det1
DET1 partner of COP1 E3 ubiquitin ligase.
     
 0.950
dcaf8
DDB1 and CUL4 associated factor 8.
   
 
0.950
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.