STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsm1LSM1 homolog, mRNA degradation associated. (133 aa)    
Predicted Functional Partners:
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
lsm5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
lsm3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.995
c13h19orf54
Chromosome 13 C19orf54 homolog.
   
 0.991
patl1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.987
patl2
PAT1 homolog 2.
    
 0.987
lsm8
LSM8 homolog, U6 small nuclear RNA associated.
   
 
 0.980
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.