STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab23RAB23, member RAS oncogene family. (235 aa)    
Predicted Functional Partners:
rabggta
Rab geranylgeranyltransferase subunit alpha.
     
 0.683
LOC114869684
Rab proteins geranylgeranyltransferase component A 1-like.
   
 
 0.674
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
     
 0.650
cplane2
Ciliogenesis and planar polarity effector 2.
    
 0.639
smo
Smoothened, frizzled class receptor.
    
 
 0.564
LOC114866637
ADP-ribosylation factor-like protein 3.
    
 0.545
arl3
ADP ribosylation factor like GTPase 3.
    
 0.545
rab2a
RAB2A, member RAS oncogene family.
  
 
0.540
arl2
ADP ribosylation factor like GTPase 2.
      
 0.539
sufu
SUFU negative regulator of hedgehog signaling.
      
 0.527
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.