STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDHR1Cadherin related family member 1. (865 aa)    
Predicted Functional Partners:
LOC114856819
Junction plakoglobin-like.
    
 0.719
jup
Junction plakoglobin.
    
 0.719
LOC114865743
Catenin beta-1-like.
    
 0.719
ctnnb1
Catenin beta 1.
    
 0.719
fjx1
Four-jointed box kinase 1.
   
 0.687
ctnna1
Catenin alpha 1.
    
 0.681
ctnna2
Catenin alpha 2.
    
 0.681
ush1c
USH1 protein network component harmonin.
   
 
 0.645
LOC114851850
Cadherin-related family member 5-like.
   
0.632
LOC114846475
Protocadherin-15-like.
   
0.632
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.