kcnk3 protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

kcnk3

Potassium two pore domain channel subfamily K member 3. (400 aa)

Predicted Functional Partners:

ENSBSLP00000049507

0.660

kcnk9

0.651

LOC114845458

0.604

kcnk5

0.544

KCNK4

0.543

kcnk4

0.543

LOC114852788

0.525

kcnk2

0.525

kcnk10

0.525

LOC114842469

0.505

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSBSLP00000049507	KCNK4	ENSBSLP00000049507	ENSBSLP00000022801	Potassium channel, subfamily K, member 1b.	Potassium channel subfamily K member 4-like.	0.656
ENSBSLP00000049507	LOC114842469	ENSBSLP00000049507	ENSBSLP00000055558	Potassium channel, subfamily K, member 1b.	Potassium channel subfamily K member 5-like.	0.628
ENSBSLP00000049507	LOC114852788	ENSBSLP00000049507	ENSBSLP00000020986	Potassium channel, subfamily K, member 1b.	Potassium channel subfamily K member 2-like.	0.732
ENSBSLP00000049507	kcnk10	ENSBSLP00000049507	ENSBSLP00000050294	Potassium channel, subfamily K, member 1b.	Potassium two pore domain channel subfamily K member 10.	0.732
ENSBSLP00000049507	kcnk2	ENSBSLP00000049507	ENSBSLP00000026687	Potassium channel, subfamily K, member 1b.	Potassium two pore domain channel subfamily K member 2.	0.732
ENSBSLP00000049507	kcnk3	ENSBSLP00000049507	ENSBSLP00000050206	Potassium channel, subfamily K, member 1b.	Potassium two pore domain channel subfamily K member 3.	0.660
ENSBSLP00000049507	kcnk4	ENSBSLP00000049507	ENSBSLP00000037533	Potassium channel, subfamily K, member 1b.	Potassium two pore domain channel subfamily K member 4.	0.656
ENSBSLP00000049507	kcnk5	ENSBSLP00000049507	ENSBSLP00000055585	Potassium channel, subfamily K, member 1b.	Potassium two pore domain channel subfamily K member 5.	0.669
ENSBSLP00000049507	kcnk9	ENSBSLP00000049507	ENSBSLP00000007885	Potassium channel, subfamily K, member 1b.	Potassium two pore domain channel subfamily K member 9.	0.660
KCNK4	ENSBSLP00000049507	ENSBSLP00000022801	ENSBSLP00000049507	Potassium channel subfamily K member 4-like.	Potassium channel, subfamily K, member 1b.	0.656
KCNK4	LOC114842469	ENSBSLP00000022801	ENSBSLP00000055558	Potassium channel subfamily K member 4-like.	Potassium channel subfamily K member 5-like.	0.644
KCNK4	LOC114845458	ENSBSLP00000022801	ENSBSLP00000056866	Potassium channel subfamily K member 4-like.	Potassium channel subfamily K member 1-like.	0.647
KCNK4	LOC114852788	ENSBSLP00000022801	ENSBSLP00000020986	Potassium channel subfamily K member 4-like.	Potassium channel subfamily K member 2-like.	0.539
KCNK4	kcnk10	ENSBSLP00000022801	ENSBSLP00000050294	Potassium channel subfamily K member 4-like.	Potassium two pore domain channel subfamily K member 10.	0.529
KCNK4	kcnk2	ENSBSLP00000022801	ENSBSLP00000026687	Potassium channel subfamily K member 4-like.	Potassium two pore domain channel subfamily K member 2.	0.537
KCNK4	kcnk3	ENSBSLP00000022801	ENSBSLP00000050206	Potassium channel subfamily K member 4-like.	Potassium two pore domain channel subfamily K member 3.	0.543
KCNK4	kcnk5	ENSBSLP00000022801	ENSBSLP00000055585	Potassium channel subfamily K member 4-like.	Potassium two pore domain channel subfamily K member 5.	0.617
KCNK4	kcnk9	ENSBSLP00000022801	ENSBSLP00000007885	Potassium channel subfamily K member 4-like.	Potassium two pore domain channel subfamily K member 9.	0.543
LOC114842469	ENSBSLP00000049507	ENSBSLP00000055558	ENSBSLP00000049507	Potassium channel subfamily K member 5-like.	Potassium channel, subfamily K, member 1b.	0.628
LOC114842469	KCNK4	ENSBSLP00000055558	ENSBSLP00000022801	Potassium channel subfamily K member 5-like.	Potassium channel subfamily K member 4-like.	0.644