STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spata7Spermatogenesis associated 7. (587 aa)    
Predicted Functional Partners:
ENSBSLP00000001837
RPGR interacting protein 1.
   
 
 0.642
LOC114845751
X-linked retinitis pigmentosa GTPase regulator-like.
   
 
 0.542
rpgr
Retinitis pigmentosa GTPase regulator.
   
 
 0.542
ttc8
Tetratricopeptide repeat domain 8.
   
  
 0.540
nphp4
Nephrocystin 4.
    
 
 0.536
rd3
Retinal degeneration 3, GUCY2D regulator.
      
 0.533
spata17
Spermatogenesis associated 17.
      
 0.531
mal
Nephrocystin 1.
    
 
 0.524
prpf38a
pre-mRNA processing factor 38A.
   
  
 0.519
LOC114849266
Lebercilin-like.
      
 0.497
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.